Did you understand the documentation? Could you get the objects to do what you wanted them to do? If BioPerl was useless we want to know why, and if it was great - that too. Post a message to bioperl-l bioperl. By writing a good script that uses BioPerl you both show that BioPerl is useful and probably save someone elsewhere writing it. Don't be nervous if you've never done this sort of work, advice is freely given and all are welcome!
We know that there are bugs in this code. If you find something which you are pretty sure is a problem, post a bug report using our Bugzilla tracking system:. Specifically, having a code and data example where appropriate helps tremendously. We gladly accept all patches after a quick code review. You can suggest areas where the objects are not ideally written and could be done better. The best way is to find the main developer of the module each module was written principally by one person, except for Seq.
Talk to him or her and suggest changes. If you can make a useful object we will happily include it into the core. Probably you will want to read a lot of the documentation in Bio::Root::Root and talk to people on the BioPerl mailing list, bioperl-l bioperl.
We appreciate good documentation. It's what tells the world what's in BioPerl, it's what instructs the user, it's what describes the rationale and inner workings of the package. Feel free to contribute. User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list.
Your participation is much appreciated. Releases from 32 onwards are available on github. Clone Ensembl git tools from GitHub - this will make it fast and easy to clone Ensembl repositories. To check out the most recent stable version of the ensembl API and web code from GitHub you need to use the latest branch of the code. This will be set as the default branch in GitHub. You can also view the Ensembl GitHub repository in your web browser.
Search terms. Search all species. Test::Most is not installed and Module::Build version 0. Okay, but surely you don't need to reinstall the module every time you run the program. You should start by installing Test::Most and updating Module::Build , as installing modules this way doesn't update the dependencies. Why can't you use CPAN? Then I would write a bash script that installs all non-core modules and dependencies, adds to PERL5LIB and exports it, and writes a command to do the export to.
Don't mess with system perl. Instead, use perlbrew to install your own Perl and any libraries you want. Show 3 more comments. Active Oldest Votes. Improve this answer. Community Bot 1 1 1 silver badge. Miller Miller Add a comment. Sign up or log in Sign up using Google.
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